This course introduces tools that help enhance reproducibility and replicability in the context of cancer informatics. It uses hands-on exercises to demonstrate in practical terms how to get acquainted with these tools but is by no means meant to be a comprehensive dive into these tools. The course introduces tools and their concepts such as git and GitHub, code review, Docker, … [Read more...] about Advanced Reproducibility in Cancer Informatics
Research Methods
BioData Processing
Can we communicate with other living beings besides animals? For example, it is well known that plants and fungi are sentient creatures, but modern societies/humans seem to regard this fact as unworthy of much attention. Perhaps we do so because we lack a common language to establish such inter-realms communication. In this hands-on project you will challenge this frontier … [Read more...] about BioData Processing
FEM – Linear, Nonlinear Analysis & Post-Processing
In this hands-on project, you will learn about the Finite Element Method (FEM) and perform a linear & nonlinear static analysis study using the cloud-based simulation tool SimScale. We will set up simulation cases with provided geometries to learn the fundamentals of the Finite Element Method and how a static linear and nonlinear analysis is approached in the first place. … [Read more...] about FEM – Linear, Nonlinear Analysis & Post-Processing
Introducing Cellular Automata
In this hands-on guided project you will be introduced to the wonders of Cellular Automata, a powerful modeling framework for the exploration of inter-scale dynamics. That is, how do simple local level rules give rise to global pattern formation and self-organization? You will explore questions like this with the help of Golly and NetLogo, two rich simulations softwares for … [Read more...] about Introducing Cellular Automata
Systems Biology and Biotechnology Capstone
NOTE: In order to take this course you should have taken and complete the following courses in the Signature Track: Introduction to Systems Biology, Network Analysis in Systems Biology, Dynamical Modeling Methods for Systems Biology, Experimental Methods in SB and Integrated Analysis In Systems Biology … [Read more...] about Systems Biology and Biotechnology Capstone